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QuaPy
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regenerating dataset

This commit is contained in:
Alejandro Moreo Fernandez 2023-07-25 10:45:44 +02:00
parent 9ad4503153
commit b756871f21
3 changed files with 34 additions and 30 deletions
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56
Ordinal/build_Amazon_datasets.py
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@ -9,7 +9,7 @@ from pathlib import Path
import numpy as np import numpy as np
datadir = '/mnt/1T/Datasets/Amazon/reviews' datadir = '/media/moreo/Volume/Datasets/Amazon/reviews'
outdir = './data/' outdir = './data/'
real_prev_path = './data/Books-real-prevalence-by-product_votes1_reviews100.csv' real_prev_path = './data/Books-real-prevalence-by-product_votes1_reviews100.csv'
domain = 'Books' domain = 'Books'
@ -22,7 +22,7 @@ nval = 1000
nte = 5000 nte = 5000
def from_gz_text(path, encoding='utf-8', class2int=True): def from_text(path, encoding='utf-8', class2int=True):
""" """
Reads a labelled colletion of documents. Reads a labelled colletion of documents.
File fomart <0-4>\t<document>\n File fomart <0-4>\t<document>\n
@ -32,7 +32,7 @@ def from_gz_text(path, encoding='utf-8', class2int=True):
:return: a list of sentences, and a list of labels :return: a list of sentences, and a list of labels
""" """
all_sentences, all_labels = [], [] all_sentences, all_labels = [], []
file = gzip.open(path, 'rt', encoding=encoding).readlines() file = open(path, 'rt', encoding=encoding).readlines()
for line in file: for line in file:
line = line.strip() line = line.strip()
if line: if line:
@ -40,7 +40,7 @@ def from_gz_text(path, encoding='utf-8', class2int=True):
label, sentence = line.split('\t') label, sentence = line.split('\t')
sentence = sentence.strip() sentence = sentence.strip()
if class2int: if class2int:
label = int(label) - 1 label = int(label)
if label >= 0: if label >= 0:
if sentence: if sentence:
all_sentences.append(sentence) all_sentences.append(sentence)
@ -66,6 +66,7 @@ def gen_samples_APP(pool: LabelledCollection, nsamples, sample_size, outdir, pre
write_txt_sample(sample, join(outdir, f'{i}.txt')) write_txt_sample(sample, join(outdir, f'{i}.txt'))
prevfile.write(f'{i},' + ','.join(f'{p:.3f}' for p in sample.prevalence()) + '\n') prevfile.write(f'{i},' + ','.join(f'{p:.3f}' for p in sample.prevalence()) + '\n')
def gen_samples_NPP(pool: LabelledCollection, nsamples, sample_size, outdir, prevpath): def gen_samples_NPP(pool: LabelledCollection, nsamples, sample_size, outdir, prevpath):
os.makedirs(outdir, exist_ok=True) os.makedirs(outdir, exist_ok=True)
with open(prevpath, 'wt') as prevfile: with open(prevpath, 'wt') as prevfile:
@ -85,36 +86,39 @@ def gen_samples_real_prevalences(real_prevalences, pool: LabelledCollection, sam
prevfile.write(f'{i},' + ','.join(f'{p:.3f}' for p in sample.prevalence()) + '\n') prevfile.write(f'{i},' + ','.join(f'{p:.3f}' for p in sample.prevalence()) + '\n')
# fullpath = join(datadir,domain)+'.txt.gz' # fullpath = join(datadir,domain)+'.txt.gz' <- deprecated; there were duplicates
#
# data = LabelledCollection.load(fullpath, from_gz_text) # data = LabelledCollection.load(fullpath, from_gz_text)
# print(len(data))
# print(data.classes_) fullpath = './data/Books/Books.txt'
# print(data.prevalence()) data = LabelledCollection.load(fullpath, from_text)
print(len(data))
print(data.classes_)
print(data.prevalence())
with qp.util.temp_seed(seed): with qp.util.temp_seed(seed):
# train, rest = data.split_stratified(train_prop=tr_size) train, rest = data.split_stratified(train_prop=tr_size)
#
# devel, test = rest.split_stratified(train_prop=0.5) devel, test = rest.split_stratified(train_prop=0.5)
# print(len(train)) print(len(train))
# print(len(devel)) print(len(devel))
# print(len(test)) print(len(test))
#
domaindir = join(outdir, domain) domaindir = join(outdir, domain)
# write_txt_sample(train, join(domaindir, 'training_data.txt')) write_txt_sample(train, join(domaindir, 'training_data.txt'))
# write_txt_sample(devel, join(domaindir, 'development_data.txt')) write_txt_sample(devel, join(domaindir, 'development_data.txt'))
# write_txt_sample(test, join(domaindir, 'test_data.txt')) write_txt_sample(test, join(domaindir, 'test_data.txt'))
# this part is to be used when the partitions have already been created, in order to avoid re-generating them # this part is to be used when the partitions have already been created, in order to avoid re-generating them
train = load_simple_sample_raw(domaindir, 'training_data') #train = load_simple_sample_raw(domaindir, 'training_data')
devel = load_simple_sample_raw(domaindir, 'development_data') #devel = load_simple_sample_raw(domaindir, 'development_data')
test = load_simple_sample_raw(domaindir, 'test_data') #test = load_simple_sample_raw(domaindir, 'test_data')
# gen_samples_APP(devel, nsamples=nval, sample_size=val_size, outdir=join(domaindir, 'app', 'dev_samples'), gen_samples_APP(devel, nsamples=nval, sample_size=val_size, outdir=join(domaindir, 'app', 'dev_samples'),
# prevpath=join(domaindir, 'app', 'dev_prevalences.txt')) prevpath=join(domaindir, 'app', 'dev_prevalences.txt'))
# gen_samples_APP(test, nsamples=nte, sample_size=te_size, outdir=join(domaindir, 'app', 'test_samples'), gen_samples_APP(test, nsamples=nte, sample_size=te_size, outdir=join(domaindir, 'app', 'test_samples'),
# prevpath=join(domaindir, 'app', 'test_prevalences.txt')) prevpath=join(domaindir, 'app', 'test_prevalences.txt'))
# gen_samples_NPP(devel, nsamples=nval, sample_size=val_size, outdir=join(domaindir, 'npp', 'dev_samples'), # gen_samples_NPP(devel, nsamples=nval, sample_size=val_size, outdir=join(domaindir, 'npp', 'dev_samples'),
# prevpath=join(domaindir, 'npp', 'dev_prevalences.txt')) # prevpath=join(domaindir, 'npp', 'dev_prevalences.txt'))

2
Ordinal/finetune_bert.py
View File

@ -49,7 +49,7 @@ if __name__ == '__main__':
datapath = sys.argv[1] # './data/Books/training_data.txt' datapath = sys.argv[1] # './data/Books/training_data.txt'
checkpoint = sys.argv[2] #e.g., 'bert-base-uncased' or 'distilbert-base-uncased' or 'roberta-base' checkpoint = sys.argv[2] #e.g., 'bert-base-uncased' or 'distilbert-base-uncased' or 'roberta-base'
modelout = checkpoint+'-val-finetuned' modelout = checkpoint+'-finetuned-new'
# load the training set, and extract a held-out validation split of 1000 documents (stratified) # load the training set, and extract a held-out validation split of 1000 documents (stratified)
df = pd.read_csv(datapath, sep='\t', names=['labels', 'review'], quoting=csv.QUOTE_NONE) df = pd.read_csv(datapath, sep='\t', names=['labels', 'review'], quoting=csv.QUOTE_NONE)

6
Ordinal/generate_bert_vectors_npytxt.py
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@ -98,14 +98,14 @@ if __name__ == '__main__':
assert torch.cuda.is_available(), 'cuda is not available' assert torch.cuda.is_available(), 'cuda is not available'
#checkpoint='roberta-base-val-finetuned' #checkpoint='roberta-base-val-finetuned'
#generation_mode = 'ave' #generation_mode = 'average' #ave seemed to work slightly better
n_args = len(sys.argv) n_args = len(sys.argv)
assert n_args==3, 'wrong arguments, expected: <checkpoint> <generation-mode>\n' \ assert n_args==3, 'wrong arguments, expected: <checkpoint> <generation-mode>\n' \
'\tgeneration-mode: last (last layer), ave (average pooling), or posteriors (posterior probabilities)' '\tgeneration-mode: last (last layer), ave (average pooling), or posteriors (posterior probabilities)'
checkpoint = sys.argv[1] #e.g., 'bert-base-uncased' checkpoint = sys.argv[1] #e.g., 'bert-base-uncased'
generation_mode = sys.argv[2] # e.g., 'last' generation_mode = sys.argv[2] # e.g., 'average' # ave seemed to work slightly better
assert 'finetuned' in checkpoint, 'looks like this model is not finetuned' assert 'finetuned' in checkpoint, 'looks like this model is not finetuned'
@ -115,7 +115,7 @@ if __name__ == '__main__':
datapath = './data' datapath = './data'
domain = 'Books' domain = 'Books'
protocols = ['real'] # ['app', 'npp'] protocols = ['real', 'app'] # ['app', 'npp']
assert generation_mode in ['last', 'average', 'posteriors'], 'unknown generation_model' assert generation_mode in ['last', 'average', 'posteriors'], 'unknown generation_model'
outname = domain + f'-{checkpoint}-{generation_mode}' outname = domain + f'-{checkpoint}-{generation_mode}'