remote execution implemented
This commit is contained in:
Lorenzo Volpi
parent
7c9a3df0e7
commit
2ee86c215c
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@ -230,4 +230,4 @@ main_conf: &main_conf
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- atc_ne
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- doc_feat
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exec: *main_conf
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exec: *debug_conf
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@ -126,198 +126,131 @@ files = [
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[[package]]
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name = "contourpy"
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version = "1.1.0"
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version = "1.2.0"
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description = "Python library for calculating contours of 2D quadrilateral grids"
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optional = false
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python-versions = ">=3.8"
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python-versions = ">=3.9"
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files = [
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]
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||||
|
||||
[package.dependencies]
|
||||
tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
|
||||
|
||||
[package.extras]
|
||||
toml = ["tomli"]
|
||||
|
||||
|
|
@ -368,60 +301,86 @@ test-randomorder = ["pytest-randomly"]
|
|||
|
||||
[[package]]
|
||||
name = "cycler"
|
||||
version = "0.11.0"
|
||||
version = "0.12.1"
|
||||
description = "Composable style cycles"
|
||||
optional = false
|
||||
python-versions = ">=3.6"
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||||
python-versions = ">=3.8"
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files = [
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||||
|
||||
[package.extras]
|
||||
docs = ["ipython", "matplotlib", "numpydoc", "sphinx"]
|
||||
tests = ["pytest", "pytest-cov", "pytest-xdist"]
|
||||
|
||||
[[package]]
|
||||
name = "exceptiongroup"
|
||||
version = "1.1.3"
|
||||
description = "Backport of PEP 654 (exception groups)"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
files = [
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||||
[package.extras]
|
||||
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|
||||
all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"]
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||||
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||||
interpolatable = ["munkres", "scipy"]
|
||||
lxml = ["lxml (>=4.0,<5)"]
|
||||
|
|
@ -431,7 +390,7 @@ repacker = ["uharfbuzz (>=0.23.0)"]
|
|||
symfont = ["sympy"]
|
||||
type1 = ["xattr"]
|
||||
ufo = ["fs (>=2.2.0,<3)"]
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||||
unicode = ["unicodedata2 (>=15.0.0)"]
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||||
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||||
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||||
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||||
[[package]]
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||||
|
|
@ -667,52 +626,51 @@ files = [
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||||
[[package]]
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||||
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||||
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||||
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||||
[package.dependencies]
|
||||
contourpy = ">=1.0.1"
|
||||
cycler = ">=0.10"
|
||||
fonttools = ">=4.22.0"
|
||||
kiwisolver = ">=1.0.1"
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||||
kiwisolver = ">=1.3.1"
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||||
numpy = ">=1.21,<2"
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||||
packaging = ">=20.0"
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||||
pillow = ">=6.2.0"
|
||||
pillow = ">=8"
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||||
pyparsing = ">=2.3.1"
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||||
python-dateutil = ">=2.7"
|
||||
setuptools_scm = ">=7"
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||||
|
||||
[[package]]
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||||
name = "numpy"
|
||||
|
|
@ -750,13 +708,13 @@ files = [
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|||
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||||
[[package]]
|
||||
name = "packaging"
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version = "23.1"
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version = "23.2"
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description = "Core utilities for Python packages"
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[[package]]
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|
@ -819,40 +777,43 @@ xml = ["lxml (>=4.8.0)"]
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|||
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[[package]]
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||||
name = "pandas"
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version = "2.1.1"
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version = "2.1.2"
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optional = false
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]
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||||
|
||||
[package.dependencies]
|
||||
numpy = {version = ">=1.23.2", markers = "python_version == \"3.11\""}
|
||||
numpy = [
|
||||
{version = ">=1.22.4,<2", markers = "python_version < \"3.11\""},
|
||||
{version = ">=1.23.2,<2", markers = "python_version == \"3.11\""},
|
||||
]
|
||||
python-dateutil = ">=2.8.2"
|
||||
pytz = ">=2020.1"
|
||||
tzdata = ">=2022.1"
|
||||
|
|
@ -904,65 +865,65 @@ invoke = ["invoke (>=2.0)"]
|
|||
|
||||
[[package]]
|
||||
name = "pillow"
|
||||
version = "10.0.1"
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||||
version = "10.1.0"
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||||
description = "Python Imaging Library (Fork)"
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||||
optional = false
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python-versions = ">=3.8"
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[package.extras]
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[[package]]
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]
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||||
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||||
[package.dependencies]
|
||||
|
|
@ -1099,20 +1067,22 @@ diagrams = ["jinja2", "railroad-diagrams"]
|
|||
|
||||
[[package]]
|
||||
name = "pytest"
|
||||
version = "7.4.2"
|
||||
version = "7.4.3"
|
||||
description = "pytest: simple powerful testing with Python"
|
||||
optional = false
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python-versions = ">=3.7"
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files = [
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]
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||||
[package.dependencies]
|
||||
colorama = {version = "*", markers = "sys_platform == \"win32\""}
|
||||
exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
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||||
iniconfig = "*"
|
||||
packaging = "*"
|
||||
pluggy = ">=0.12,<2.0"
|
||||
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
|
||||
|
||||
[package.extras]
|
||||
testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
|
||||
|
|
@ -1137,13 +1107,13 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale
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|||
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||||
[[package]]
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||||
name = "pytest-mock"
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version = "3.11.1"
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version = "3.12.0"
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description = "Thin-wrapper around the mock package for easier use with pytest"
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optional = false
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python-versions = ">=3.7"
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python-versions = ">=3.8"
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[package.dependencies]
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@ -1258,37 +1228,37 @@ xlrd = "*"
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[[package]]
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||||
name = "scikit-learn"
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||||
version = "1.3.1"
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version = "1.3.2"
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||||
description = "A set of python modules for machine learning and data mining"
|
||||
optional = false
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python-versions = ">=3.8"
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|
||||
{file = "scikit_learn-1.3.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1d08ada33e955c54355d909b9c06a4789a729977f165b8bae6f225ff0a60ec4a"},
|
||||
{file = "scikit_learn-1.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:763f0ae4b79b0ff9cca0bf3716bcc9915bdacff3cebea15ec79652d1cc4fa5c9"},
|
||||
{file = "scikit_learn-1.3.2-cp39-cp39-win_amd64.whl", hash = "sha256:ed932ea780517b00dae7431e031faae6b49b20eb6950918eb83bd043237950e0"},
|
||||
]
|
||||
|
||||
[package.dependencies]
|
||||
|
|
@ -1341,42 +1311,6 @@ dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"]
|
|||
doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"]
|
||||
test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
|
||||
|
||||
[[package]]
|
||||
name = "setuptools"
|
||||
version = "68.2.2"
|
||||
description = "Easily download, build, install, upgrade, and uninstall Python packages"
|
||||
optional = false
|
||||
python-versions = ">=3.8"
|
||||
files = [
|
||||
{file = "setuptools-68.2.2-py3-none-any.whl", hash = "sha256:b454a35605876da60632df1a60f736524eb73cc47bbc9f3f1ef1b644de74fd2a"},
|
||||
{file = "setuptools-68.2.2.tar.gz", hash = "sha256:4ac1475276d2f1c48684874089fefcd83bd7162ddaafb81fac866ba0db282a87"},
|
||||
]
|
||||
|
||||
[package.extras]
|
||||
docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
|
||||
testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
|
||||
testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.1)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
|
||||
|
||||
[[package]]
|
||||
name = "setuptools-scm"
|
||||
version = "8.0.3"
|
||||
description = "the blessed package to manage your versions by scm tags"
|
||||
optional = false
|
||||
python-versions = ">=3.8"
|
||||
files = [
|
||||
{file = "setuptools-scm-8.0.3.tar.gz", hash = "sha256:0169fd70197efda2f8c4d0b2a7a3d614431b488116f37b79d031e9e7ec884d8c"},
|
||||
{file = "setuptools_scm-8.0.3-py3-none-any.whl", hash = "sha256:813822234453438a13c78d05c8af29918fbc06f88efb33d38f065340bbb48c39"},
|
||||
]
|
||||
|
||||
[package.dependencies]
|
||||
packaging = ">=20"
|
||||
setuptools = "*"
|
||||
|
||||
[package.extras]
|
||||
docs = ["entangled-cli[rich]", "mkdocs", "mkdocs-entangled-plugin", "mkdocs-material", "mkdocstrings[python]", "pygments"]
|
||||
rich = ["rich"]
|
||||
test = ["pytest", "rich", "virtualenv (>20)"]
|
||||
|
||||
[[package]]
|
||||
name = "six"
|
||||
version = "1.16.0"
|
||||
|
|
@ -1413,6 +1347,17 @@ files = [
|
|||
{file = "threadpoolctl-3.2.0.tar.gz", hash = "sha256:c96a0ba3bdddeaca37dc4cc7344aafad41cdb8c313f74fdfe387a867bba93355"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "tomli"
|
||||
version = "2.0.1"
|
||||
description = "A lil' TOML parser"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
files = [
|
||||
{file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
|
||||
{file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "tqdm"
|
||||
version = "4.66.1"
|
||||
|
|
@ -1462,5 +1407,5 @@ test = ["pytest", "pytest-cov"]
|
|||
|
||||
[metadata]
|
||||
lock-version = "2.0"
|
||||
python-versions = "^3.11"
|
||||
content-hash = "37ec2a6dc789cf3a8403a0e3481b733022329913a8153af7cc8ff6dde8570098"
|
||||
python-versions = "^3.10.12"
|
||||
content-hash = "6b6c98c2d110094d6a421c7dfd077e63009dc7f00e56fcb6a3fefc02546d2ceb"
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@ authors = ["Lorenzo Volpi <lorenzo.volpi@outlook.com>"]
|
|||
readme = "README.md"
|
||||
|
||||
[tool.poetry.dependencies]
|
||||
python = "^3.11"
|
||||
python = "^3.10"
|
||||
quapy = "^0.1.7"
|
||||
pandas = "^2.0.3"
|
||||
jinja2 = "^3.1.2"
|
||||
|
|
@ -15,8 +15,7 @@ logging = "^0.4.9.6"
|
|||
|
||||
[tool.poetry.scripts]
|
||||
main = "quacc.main:main"
|
||||
comp = "quacc.main:estimate_comparison"
|
||||
tohost = "scp_sync:scp_sync_to_host"
|
||||
run = "run:run"
|
||||
|
||||
|
||||
[tool.poetry.group.dev.dependencies]
|
||||
|
|
@ -36,4 +35,5 @@ build-backend = "poetry.core.masonry.api"
|
|||
|
||||
[virtualenvs]
|
||||
in-project = true
|
||||
prefer-active-python = true
|
||||
|
||||
|
|
|
|||
106
quacc.log
106
quacc.log
|
|
@ -4669,3 +4669,109 @@
|
|||
07/11/23 05:30:45| INFO mul_sld_gs finished [took 365.9283s]
|
||||
07/11/23 05:30:45| INFO Dataset sample 0.90 of dataset imdb_9prevs finished [took 366.4930s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
08/11/23 20:56:59| INFO dataset rcv1_CCAT_1prevs
|
||||
08/11/23 20:59:19| ERROR Evaluation over rcv1_CCAT_1prevs failed. Exception: HTTP Error 403: Forbidden
|
||||
08/11/23 20:59:19| ERROR Failed while saving configuration rcv1_CCAT_debug of rcv1_CCAT_1prevs. Exception: cannot access local variable 'dr' where it is not associated with a value
|
||||
----------------------------------------------------------------------------------------------------
|
||||
08/11/23 21:31:49| INFO dataset rcv1_CCAT_1prevs
|
||||
08/11/23 22:01:21| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
08/11/23 22:02:41| INFO ref finished [took 68.4653s]
|
||||
08/11/23 22:02:47| INFO atc_mc finished [took 68.0908s]
|
||||
08/11/23 22:02:57| INFO mulmc_sld finished [took 90.6417s]
|
||||
08/11/23 22:02:57| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 95.9050s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
08/11/23 23:22:01| INFO dataset rcv1_CCAT_1prevs
|
||||
08/11/23 23:22:07| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
08/11/23 23:23:59| INFO ref finished [took 98.1608s]
|
||||
08/11/23 23:24:07| INFO atc_mc finished [took 97.2017s]
|
||||
08/11/23 23:24:18| INFO mulmc_sld finished [took 122.6902s]
|
||||
08/11/23 23:24:18| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 130.7814s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 00:13:41| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 00:13:47| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 00:15:21| INFO ref finished [took 79.7435s]
|
||||
09/11/23 00:15:30| INFO atc_mc finished [took 80.6728s]
|
||||
09/11/23 00:15:41| INFO mulmc_sld finished [took 107.4293s]
|
||||
09/11/23 00:15:41| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 113.6376s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 00:18:43| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 00:18:49| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 00:20:31| INFO ref finished [took 87.0388s]
|
||||
09/11/23 00:20:39| INFO atc_mc finished [took 84.1993s]
|
||||
09/11/23 00:20:50| INFO mulmc_sld finished [took 114.1533s]
|
||||
09/11/23 00:20:50| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 120.4891s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 00:38:26| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 00:38:32| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 00:45:25| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 00:45:31| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 02:02:02| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 02:02:08| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 02:03:31| INFO ref finished [took 70.0867s]
|
||||
09/11/23 02:03:41| INFO atc_mc finished [took 72.5382s]
|
||||
09/11/23 02:03:49| INFO mulmc_sld finished [took 95.3226s]
|
||||
09/11/23 02:03:49| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 101.1888s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 03:15:02| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 03:15:08| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 03:16:09| INFO ref finished [took 51.7905s]
|
||||
09/11/23 03:16:17| INFO atc_mc finished [took 54.5337s]
|
||||
09/11/23 03:16:29| INFO mulmc_sld finished [took 77.7583s]
|
||||
09/11/23 03:16:29| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 81.7392s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 03:17:34| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 03:17:39| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 03:18:42| INFO ref finished [took 52.5292s]
|
||||
09/11/23 03:18:49| INFO atc_mc finished [took 54.8090s]
|
||||
09/11/23 03:18:59| INFO mulmc_sld finished [took 75.5262s]
|
||||
09/11/23 03:18:59| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 79.5247s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 03:20:07| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 03:20:12| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 03:21:15| INFO ref finished [took 53.0266s]
|
||||
09/11/23 03:21:22| INFO atc_mc finished [took 54.2621s]
|
||||
09/11/23 03:21:34| INFO mulmc_sld finished [took 77.6939s]
|
||||
09/11/23 03:21:34| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 81.6421s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 03:33:31| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 03:33:36| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 03:34:37| INFO ref finished [took 52.0023s]
|
||||
09/11/23 03:34:45| INFO atc_mc finished [took 54.5041s]
|
||||
09/11/23 03:34:56| INFO mulmc_sld finished [took 76.1746s]
|
||||
09/11/23 03:34:56| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 80.1391s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 03:35:42| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 03:35:47| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 03:36:49| INFO ref finished [took 52.3397s]
|
||||
09/11/23 03:36:57| INFO atc_mc finished [took 54.5340s]
|
||||
09/11/23 03:37:09| INFO mulmc_sld finished [took 77.3609s]
|
||||
09/11/23 03:37:09| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 81.7535s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 03:41:09| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 03:41:15| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 03:42:55| INFO ref finished [took 88.9777s]
|
||||
09/11/23 03:43:09| INFO atc_mc finished [took 98.3887s]
|
||||
09/11/23 04:15:21| DEBUG [MultiClassAccuracyEstimator] optimization finished: best params {'quantifier__classifier__C': 10.0, 'quantifier__classifier__class_weight': None, 'quantifier__recalib': 'bcts', 'quantifier__exact_train_prev': True, 'confidence': 'entropy'} (score=0.00775) [took 2038.6779s]
|
||||
09/11/23 04:16:31| INFO mul_sld_gs finished [took 2108.9586s]
|
||||
09/11/23 04:38:52| DEBUG [BinaryQuantifierAccuracyEstimator] optimization finished: best params {'quantifier__classifier__C': 10.0, 'quantifier__classifier__class_weight': None, 'quantifier__recalib': 'bcts', 'quantifier__exact_train_prev': True, 'confidence': 'entropy'} (score=0.00835) [took 3453.3118s]
|
||||
09/11/23 04:46:36| INFO bin_sld_gs finished [took 3917.2486s]
|
||||
09/11/23 04:46:36| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 3921.2338s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 11:52:14| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 11:52:19| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 11:53:22| INFO ref finished [took 53.0955s]
|
||||
09/11/23 11:53:29| INFO atc_mc finished [took 55.3922s]
|
||||
09/11/23 11:53:43| INFO mulmc_sld finished [took 79.5846s]
|
||||
09/11/23 11:53:43| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 83.5652s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 11:55:48| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 11:55:53| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 11:56:54| INFO ref finished [took 51.3170s]
|
||||
09/11/23 11:57:03| INFO atc_mc finished [took 54.3593s]
|
||||
09/11/23 11:57:14| INFO mulmc_sld finished [took 76.8769s]
|
||||
09/11/23 11:57:14| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs finished [took 80.8969s]
|
||||
----------------------------------------------------------------------------------------------------
|
||||
09/11/23 12:21:45| INFO dataset rcv1_CCAT_1prevs
|
||||
09/11/23 12:21:50| INFO Dataset sample 0.50 of dataset rcv1_CCAT_1prevs started
|
||||
09/11/23 12:22:52| INFO ref finished [took 51.8981s]
|
||||
09/11/23 12:23:00| INFO atc_mc finished [took 54.6032s]
|
||||
|
|
|
|||
|
|
@ -0,0 +1,195 @@
|
|||
import os
|
||||
import queue
|
||||
import stat
|
||||
import threading
|
||||
from itertools import product as itproduct
|
||||
from os.path import expanduser
|
||||
from pathlib import Path
|
||||
|
||||
import paramiko
|
||||
from tqdm import tqdm
|
||||
|
||||
known_hosts = Path(expanduser("~/.ssh/known_hosts"))
|
||||
hostname = "ilona.isti.cnr.it"
|
||||
username = "volpi"
|
||||
|
||||
__exec_main = "cd tesi; /home/volpi/.local/bin/poetry run main"
|
||||
__exec_log = "/usr/bin/tail -f -n 0 tesi/quacc.log"
|
||||
__log_file = "quacc.log"
|
||||
__target_dir = Path("/home/volpi/tesi")
|
||||
__to_sync_up = {
|
||||
"dir": [
|
||||
"quacc",
|
||||
"baselines",
|
||||
],
|
||||
"file": [
|
||||
"conf.yaml",
|
||||
"run.py",
|
||||
],
|
||||
}
|
||||
__to_sync_down = {
|
||||
"dir": [
|
||||
"output",
|
||||
],
|
||||
"file": [],
|
||||
}
|
||||
|
||||
|
||||
def prune_remote(sftp: paramiko.SFTPClient, remote: Path):
|
||||
_ex_list = []
|
||||
mode = sftp.stat(str(remote)).st_mode
|
||||
if stat.S_ISDIR(mode):
|
||||
for f in sftp.listdir(str(remote)):
|
||||
_ex_list.append([prune_remote, sftp, remote / f])
|
||||
_ex_list.append([sftp.rmdir, str(remote)])
|
||||
elif stat.S_ISREG(mode):
|
||||
_ex_list.append([sftp.remove, str(remote)])
|
||||
|
||||
return _ex_list
|
||||
|
||||
|
||||
def put_dir(sftp: paramiko.SFTPClient, from_: Path, to_: Path):
|
||||
_ex_list = []
|
||||
|
||||
_ex_list.append([sftp.mkdir, str(to_)])
|
||||
|
||||
from_list = os.listdir(from_)
|
||||
for f in from_list:
|
||||
if (from_ / f).is_file():
|
||||
_ex_list.append([sftp.put, str(from_ / f), str(to_ / f)])
|
||||
elif (from_ / f).is_dir():
|
||||
_ex_list += put_dir(sftp, from_ / f, to_ / f)
|
||||
|
||||
to_list = sftp.listdir(str(to_))
|
||||
for f in to_list:
|
||||
if f not in from_list:
|
||||
_ex_list += prune_remote(sftp, to_ / f)
|
||||
|
||||
return _ex_list
|
||||
|
||||
|
||||
def get_dir(sftp: paramiko.SFTPClient, from_: Path, to_: Path):
|
||||
_ex_list = []
|
||||
|
||||
if not (to_.exists() and to_.is_dir()):
|
||||
_ex_list.append([os.mkdir, to_])
|
||||
|
||||
for f in sftp.listdir(str(from_)):
|
||||
mode = sftp.stat(str(from_ / f)).st_mode
|
||||
if stat.S_ISDIR(mode):
|
||||
_ex_list += get_dir(sftp, from_ / f, to_ / f)
|
||||
_ex_list.append([sftp.rmdir, str(from_ / f)])
|
||||
elif stat.S_ISREG(mode):
|
||||
_ex_list.append([sftp.get, str(from_ / f), str(to_ / f)])
|
||||
_ex_list.append([sftp.remove, str(from_ / f)])
|
||||
|
||||
return _ex_list
|
||||
|
||||
|
||||
def sync_code(*, ssh: paramiko.SSHClient = None, verbose=False):
|
||||
_was_ssh = ssh is not None
|
||||
if ssh is None:
|
||||
ssh = paramiko.SSHClient()
|
||||
ssh.load_host_keys(known_hosts)
|
||||
ssh.connect(hostname=hostname, username=username)
|
||||
|
||||
sftp = ssh.open_sftp()
|
||||
|
||||
to_move = [item for k, vs in __to_sync_up.items() for item in itproduct([k], vs)]
|
||||
_ex_list = []
|
||||
for mode, f in to_move:
|
||||
from_ = Path(f).absolute()
|
||||
to_ = __target_dir / f
|
||||
if mode == "dir":
|
||||
_ex_list += put_dir(sftp, from_, to_)
|
||||
elif mode == "file":
|
||||
_ex_list.append([sftp.put, str(from_), str(to_)])
|
||||
|
||||
for _ex in tqdm(_ex_list, desc="synching code: "):
|
||||
fn_ = _ex[0]
|
||||
try:
|
||||
fn_(*_ex[1:])
|
||||
except IOError:
|
||||
if verbose:
|
||||
print(f"Info: directory {to_} already exists.")
|
||||
|
||||
sftp.close()
|
||||
if not _was_ssh:
|
||||
ssh.close()
|
||||
|
||||
|
||||
def sync_output(*, ssh: paramiko.SSHClient = None):
|
||||
_was_ssh = ssh is not None
|
||||
if ssh is None:
|
||||
ssh = paramiko.SSHClient()
|
||||
ssh.load_host_keys(known_hosts)
|
||||
ssh.connect(hostname=hostname, username=username)
|
||||
|
||||
sftp = ssh.open_sftp()
|
||||
|
||||
to_move = [item for k, vs in __to_sync_down.items() for item in itproduct([k], vs)]
|
||||
_ex_list = []
|
||||
for mode, f in to_move:
|
||||
from_ = __target_dir / f
|
||||
to_ = Path(f).absolute()
|
||||
if mode == "dir":
|
||||
_ex_list += get_dir(sftp, from_, to_)
|
||||
elif mode == "file":
|
||||
_ex_list.append([sftp.get, str(from_), str(to_)])
|
||||
|
||||
for _ex in tqdm(_ex_list, desc="synching output: "):
|
||||
fn_ = _ex[0]
|
||||
fn_(*_ex[1:])
|
||||
|
||||
sftp.close()
|
||||
if not _was_ssh:
|
||||
ssh.close()
|
||||
|
||||
|
||||
def _echo_channel(ch: paramiko.ChannelFile):
|
||||
while line := ch.readline():
|
||||
print(line, end="")
|
||||
|
||||
|
||||
def _echo_log(ssh: paramiko.SSHClient, q_: queue.Queue):
|
||||
_, rout, _ = ssh.exec_command(__exec_log, timeout=5.0)
|
||||
while True:
|
||||
try:
|
||||
with open(__log_file, "a") as f:
|
||||
f.write(rout.readline())
|
||||
except TimeoutError:
|
||||
pass
|
||||
|
||||
try:
|
||||
q_.get_nowait()
|
||||
return
|
||||
except queue.Empty:
|
||||
pass
|
||||
|
||||
|
||||
def remote():
|
||||
ssh = paramiko.SSHClient()
|
||||
ssh.load_host_keys(known_hosts)
|
||||
ssh.connect(hostname=hostname, username=username)
|
||||
sync_code(ssh=ssh)
|
||||
|
||||
_, rout, rerr = ssh.exec_command(__exec_main)
|
||||
q = queue.Queue()
|
||||
|
||||
_tlog = threading.Thread(target=_echo_log, args=[ssh, q])
|
||||
_tlog.start()
|
||||
|
||||
_tchans = [threading.Thread(target=_echo_channel, args=[ch]) for ch in [rout, rerr]]
|
||||
|
||||
for th in _tchans:
|
||||
th.start()
|
||||
|
||||
for th in _tchans:
|
||||
th.join()
|
||||
|
||||
q.put(None)
|
||||
|
||||
sync_output(ssh=ssh)
|
||||
|
||||
_tlog.join()
|
||||
ssh.close()
|
||||
|
|
@ -0,0 +1,24 @@
|
|||
import argparse
|
||||
|
||||
from quacc.main import main as _main
|
||||
from remote import remote as _remote
|
||||
|
||||
|
||||
def run_local():
|
||||
_main()
|
||||
|
||||
|
||||
def run_remote():
|
||||
_remote()
|
||||
|
||||
|
||||
def run():
|
||||
parser = argparse.ArgumentParser()
|
||||
parser.add_argument("-l", "--local", action="store_true", dest="local")
|
||||
parser.add_argument("-r", "--remote", action="store_true", dest="remote")
|
||||
args = parser.parse_args()
|
||||
|
||||
if args.local:
|
||||
run_local()
|
||||
elif args.remote:
|
||||
run_remote()
|
||||
Loading…
Reference in New Issue